rs27577922 SNP Detail

Summary

• ID
  rs27577922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137680294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGACTC ACTCTAGCTA
  AGCATGTATA TAATACTCAT GGGTAGAGAA CTTGCCTGGT GTGAATGAAG CCCTGGGTTC
  CGTGCCCTGG TCGCAAAACA AAAACAGCAC AAAACAAACA AACAACATCT CTTCAGAAAA
  GTCAGACGCC CTCTCAGCTC AGTGTTCCTC AGATTAACTT TCTGACTCCA AAACATCTTT
  Y
  GCAGAATTTG TAACCTAGGT GATGACAACT CCCCTTTGCC TCTGGCGCCC TCTTGTGGAC
  AGGAGATTCA GACACCTGTT TCCTCTAAGC AAAAGATGGG CTTCAGATGG GCACAGGCAG
  GGCTGCCAAT TCATCTGAAT TTTTTTTAAA GATTTATATA TTTATGTATG TATGTATGTA
  TGTATGTATG TATGTATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770277	NES09145630	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577922					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770277	NES09145630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137680294 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	Intron
Rr398622	regulatory region 398622	within coordinates
Rr602793	regulatory region 602793	within coordinates
Rr602794	regulatory region 602794	42 bp proximal
Rr602795	regulatory region 602795	1959 bp proximal