rs27577845 SNP Detail

Summary

• ID
  rs27577845
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137689873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CAGAAACCCC TGCAGAGGGG
  K
  TGCCACCTGT AGGCGTATCT GCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770200	NES09145271	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	T	G	T	T	T		G	G	T		T
ss321369350	CHEV_4_137518477	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577845					SNP	G	T	T	T	G	T	G	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770200	NES09145271	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137689873 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	Intron
Rr602797	regulatory region 602797	1325 bp distal
Rr602798	regulatory region 602798	1421 bp proximal
Rr602799	regulatory region 602799	1478 bp proximal
Rr602800	regulatory region 602800	1855 bp proximal
Tssr39801	transcription start site region 39801	1262 bp upstream
Tssr39802	transcription start site region 39802	1912 bp upstream