rs27577843 SNP Detail

Summary

• ID
  rs27577843
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137690091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCCTCT GGCATCCTTA
  TGTCACCCGC TCCTGGCTCA CTGCGATGTC AGGCTCATTC TGCTATTGTA GTAAGGAGGC
  CAGTGCAGCA GCTTCAGCCC CCACAGTGAC CCCAGCTTCC CCTCATTACC ACCCCACCCA
  CCACCCCTAG GTCTGGTGCT CTGTCCGCAC ACCTGAGAGC TCCCACGAAG GCCTCATCAC
  S
  GATCCGCACA GCCCCTCTCG CTTCCGGGTC ATCGGCTCGC TCTCCAACTC CAAGGAGTTC
  TCAGAACACT TTCGCTGCCC GCCTGGCTCT CCCATGAACC CTCATCACAA GTGCGAAGTC
  TGGTAAGGGC TAAAGCGCAG AGAGCACGGA CAGAAAAAGG GAAGGAGCTG CAGCTAGCTC
  CCAGCGGAGC CATGTTGCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770198	NES09145273	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	G	G	G	G	G	G	G	G	G	G	C	G
ss45656640	mCV25099846	ABI	CRAMUS_MOUSE	f	SNP	G	C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577843					SNP	G	C	C	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770198	NES09145273	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137690091 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	Coding-Synonymous
Rr602797	regulatory region 602797	1543 bp distal
Rr602798	regulatory region 602798	1203 bp proximal
Rr602799	regulatory region 602799	1260 bp proximal
Rr602800	regulatory region 602800	1637 bp proximal
Tssr39801	transcription start site region 39801	1044 bp upstream
Tssr39802	transcription start site region 39802	1694 bp upstream