rs27577839 SNP Detail

Summary

• ID
  rs27577839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137690434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC CGGCATCCTG GACACCGGTG
  Y
  GTGATGCTAG GCGGGCCTTT GGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770194	NES09145280	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C		C	T	T	T		C	C	T	T		T
ss45697634	mCV25099833	ABI	CRAMUS_MOUSE	f	SNP	C	T				C		T
ss147627532	ENSMUSSNP6914292	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss321369358	CHEV_4_137519038	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577839					SNP	C	T	T	T	C	C	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770194	NES09145280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137690434 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	mRNA-UTR
Rr602797	regulatory region 602797	1886 bp distal
Rr602798	regulatory region 602798	860 bp proximal
Rr602799	regulatory region 602799	917 bp proximal
Rr602800	regulatory region 602800	1294 bp proximal
Tssr39801	transcription start site region 39801	701 bp upstream
Tssr39802	transcription start site region 39802	1351 bp upstream