rs27577834 SNP Detail

Summary

• ID
  rs27577834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137690905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTCTA AACAACCTGT
  GGACAAAGGA AACCCCACTA ATTTACCCCC TGGGAACCCC AGGCTGTGGA GAAGGCTGCC
  AGTTTGAGCG AGCACTACTT TAGCCCATTG CTGGTGTAAT TACTTCTATA GTCACCGGTG
  CAGTCAGGAG ATGTAGGGGC CCAGGCAGAG GGGGTGAGCA GCTGAAGGGC CTGGTTATGG
  R
  CGTGACCTTC TCAGCTTACC TGTCCTGTCG CTGGAGTCCA ACCATGGGAA GCCCAACAAG
  GATGGGTTGA TACCCAAGTG ATAGTTGAGG CAGCACAAAG GCAGAGTAAT GACCTTCATA
  TCACGTGGCA CCCGAACACT CTAGACTAGA ACATAGGAGC CTGTTGGAGC TGAGAACCCA
  CACCCCACCA GATGCACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770189	NES09145290	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577834					SNP	G	A	A	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770189	NES09145290	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137690905 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	mRNA-UTR
Rr602798	regulatory region 602798	389 bp proximal
Rr602799	regulatory region 602799	446 bp proximal
Rr602800	regulatory region 602800	823 bp proximal
Tssr39801	transcription start site region 39801	230 bp upstream
Tssr39802	transcription start site region 39802	880 bp upstream