rs27577827 SNP Detail

Summary

• ID
  rs27577827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137691513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTCTCT AGTGCCTTAC
  CCCAGGCTGC AGACCCTGAG CCCCACTAGG AGGCAGCATT TGGCTTGCTT TCCCAGTGGA
  GCCCCCAAGT GTCCTGACTA GAAGCCAACA CCATAGCCCC ATTCCCAGAA GCCCCAGGGT
  ACCACCCCAA CCTGCCTACA GGACAGCCAT TCCAGATAGA CGTCCAGTGT CAGGAGCTGC
  Y
  GACCTCTCAG GCTTTCAGCC ACCCGTGGCA CGCACATTGA ATCAATTCAG TCCTTGTAGA
  TAGAGGGATT CCCCTCACCC CCTCCCCCTC TCTGTTTTTT TGGAGGTGGA TGCTGTAGCC
  AGAGCAGGCC AAGACTGGAA TGTTCCCAGC CCCATTGGGC TCCAGGGAAT GGCAGAAAGT
  CATCCACCCA CAGCATCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770181	NES09145312	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577827					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770181	NES09145312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137691513 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	mRNA-UTR
Rr602798	regulatory region 602798	within coordinates
Rr602799	regulatory region 602799	141 bp distal
Rr602800	regulatory region 602800	215 bp proximal
Tssr39801	transcription start site region 39801	364 bp downstream
Tssr39802	transcription start site region 39802	272 bp upstream