rs27577818 SNP Detail

Summary

• ID
  rs27577818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137692258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCTCTTC GGGGGAAAGG
  TAACATAAGA AGGCAGGAAG GTGCTGGAGC CGTGCCCTGC CACACAAAGG GGGACCTTCT
  GGGTCTGGAT CATCTGCCCT TTCTATCCCG TCGCCTTGCC TCTCCATAGA GTGGCAGTCC
  TGGATACTGG TATCTAGAAG CGGGGTCCTG AACTGGGTTC AGCCATATGG ACATTGCTCA
  R
  GGTGTGCAGG GAGCCAAGGC AGGAAGACGC AGACTGGTTA GGGATGGATG GGCACAAAAG
  CAGAACCCCA AGCCCCGCCC CTCCAGAGAT TTGAGAAGGG CGGTAGCGGG AAGGGCATCT
  GCCCTCAGAA AGACCCCTTC TCTCAAGCCC GGAGTTTCCC TGCAGGCACA AGGACATGGG
  GTTTGGAGCT GGGGACTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770171	NES09145234	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577818					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770171	NES09145234	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137692258 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	mRNA-UTR
Rr602798	regulatory region 602798	265 bp distal
Rr602799	regulatory region 602799	886 bp distal
Rr602800	regulatory region 602800	509 bp distal
Tssr39801	transcription start site region 39801	1109 bp downstream
Tssr39802	transcription start site region 39802	407 bp downstream