rs27577815 SNP Detail

Summary

• ID
  rs27577815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137692565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAAGGGC ATCTGCCCTC
  AGAAAGACCC CTTCTCTCAA GCCCGGAGTT TCCCTGCAGG CACAAGGACA TGGGGTTTGG
  AGCTGGGGAC TCTTATTTTT TTGTATTATT GTGTTTTGTG CTACTGTAGT TTTGGTGTGG
  CACTATTATA ATTAAAATAA AGTACTTATA CCAAGAGCAG TGTGTCTGTG TGTCTGTCCT
  Y
  GGAGGATGTG TGTCCTGGAT CATGGGAGGG ACCCTGGACA GCACAAAGCT ACCAATTCTT
  TCAGAAGTCT AAGACCCTGA GGAGTAACAG GTTATTGCTG CCTGTGCCAC CCCCCACCCC
  CAGCCATTCC TTCCAGGAGG TGCTTTGTAC GTACTCCTTG CTGGTGAGAA CAGTGTCCTC
  CTCCCCCCAC GCACACACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770168	NES09145237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577815					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770168	NES09145237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137692565 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	25 bp downstream
Rr602798	regulatory region 602798	572 bp distal
Rr602799	regulatory region 602799	1193 bp distal
Rr602800	regulatory region 602800	816 bp distal
Tssr39801	transcription start site region 39801	1416 bp downstream
Tssr39802	transcription start site region 39802	714 bp downstream