rs27577755 SNP Detail

Summary

• ID
  rs27577755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137711106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAGCAAA CCTTCCTTAC
  CCTTCCAGTA ATGGGGCTGC AGGTGTGAGC CACTGTACTG GCTCTGACTT GGGTGTTGAA
  GGTTAGATAT AAGCTCATGA GTACTCCCAG AATAGGAGAG TATGGAAGGG AGAAGAGAAT
  GGATGGAAAG TCTTGGGGGG AGAGGAGGGG ATGTTCAGAG TGTGGGCGGA GAAGCGTAAG
  R
  ACGAGGAGCC AGGGGGTTAG AGAGATGGCT CAGTGGTTAA GAGCAGTGAC TGCTCTTGCA
  GAGGTCCTGA GTTCAATTCC CAGCAACCAT GTGGTTGCTC AATGGGATCC AATGCCCTCT
  TCTGTTGTGA CTAAGAGACA GTGTACTCAT ATGGGAGGCA GAGGCAGGTG GATTTCTGAG
  TTCAAGGCCA GCCTGGTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770092	NES09144784	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A
ss45605513	mCV25169827	ABI	CRAMUS_MOUSE	f	SNP		G						A
ss147628134	ENSMUSSNP6466067	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577755					SNP	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770092	NES09144784	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137711106 () rs orientation: forward

Symbol	Name	Function Class
Rr602808	regulatory region 602808	1554 bp distal
Rr602809	regulatory region 602809	459 bp proximal
Rr602810	regulatory region 602810	1430 bp proximal