rs27577624 SNP Detail

Summary

• ID
  rs27577624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138708778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG GAACTCTTGC GCAGCAATGA
  R
  GTATTTAAAA TTTCGGTTAG CTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37766258	NES09143173	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A		A	A		G
ss321378417	CHEV_4_138537382	CHEVERUD	SCREENING_POP	f	SNP					G			G
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577624					SNP	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766258	NES09143173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138708778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603066	regulatory region 603066			145 bp distal
Rr603067	regulatory region 603067			1988 bp proximal
Tmco4	transmembrane and coiled-coil domains 4			Intron
				Noncoding-Transcript-Variant