rs27577440 SNP Detail

Summary

• ID
  rs27577440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138765463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAAATAGC CCCCCCCCAA ACAAAAGTCT GTCTCCCAGC
  CAAGGACATC AATTTGCTTT GGGAATGATG CCAGCTGGTG GCAGGGGAAA GGGTGACAGT
  R
  CCCGCTGCCA AGAAGAACCT CCGCTGGAGC CCTCTCTTAA GAGACTCGCG GCCCCAAAGC
  ATAATGGACC GTTCCTTTTT TTTTTTTTTC CTCTTTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37766070	NES09141215	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	A	G	G	A	A	A
ss147663429	ENSMUSSNP5936917	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577440					SNP	G	G	G	G	G	G	G	A	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37766070	NES09141215	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138765463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603084	regulatory region 603084			within coordinates
Rr603085	regulatory region 603085			1816 bp proximal
Tmco4	transmembrane and coiled-coil domains 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant