rs27576560 SNP Detail

Summary

• ID
  rs27576560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138222090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC TGGGCAGCCT TTTGCCTGCA
  Y
  TGGATCTCAC GGCTGGCCTT GCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss37768089	NES09139857	PERLEGEN	MM_PANEL2	f	SNP	T	T	T		C	T
ss321374274	CHEV_4_138050694	CHEVERUD	SCREENING_POP	f	SNP				C			T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs27576560					SNP	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768089	NES09139857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138222090 () rs orientation: forward

Symbol	Name	Function Class
Gm32549	predicted gene, 32549	1700 bp upstream
Rr602944	regulatory region 602944	737 bp distal
Rr602945	regulatory region 602945	within coordinates
Rr602946	regulatory region 602946	860 bp proximal
Rr602947	regulatory region 602947	1158 bp proximal
Rr602948	regulatory region 602948	1460 bp proximal
Rr602949	regulatory region 602949	1763 bp proximal