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rs27576560 SNP Detail
Summary
  • ID
    rs27576560
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:138222090 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GGCTC TGGGCAGCCT TTTGCCTGCA
    Y
    TGGATCTCAC GGCTGGCCTT GCTTC                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
BALB/cByJ
DBA/2J
KK/HlJ
LG/J
NZW/LacJ
PWD/PhJ
SM/J
ss37768089 NES09139857 PERLEGEN MM_PANEL2 f SNP T T T C T
ss321374274 CHEV_4_138050694 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
BALB/cByJ
DBA/2J
KK/HlJ
LG/J
NZW/LacJ
PWD/PhJ
SM/J
rs27576560 SNP T T T C C T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37768089 NES09139857 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:138222090 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm32549 predicted gene, 32549 1700 bp upstream
Rr602944 regulatory region 602944 737 bp distal
Rr602945 regulatory region 602945 within coordinates
Rr602946 regulatory region 602946 860 bp proximal
Rr602947 regulatory region 602947 1158 bp proximal
Rr602948 regulatory region 602948 1460 bp proximal
Rr602949 regulatory region 602949 1763 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory