rs27576559 SNP Detail

Summary

• ID
  rs27576559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138223571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA GTTTGCCACC TTGCGTCTCT
  K
  AGTGGTAGAG AGGGAAGTCT CTAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss37768088	NES09139858	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G		T	G
ss321374292	CHEV_4_138052175	CHEVERUD	SCREENING_POP	f	SNP					T			G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs27576559					SNP	G	T	G	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37768088	NES09139858	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138223571 () rs orientation: forward

Symbol	Name	Function Class
Gm32549	predicted gene, 32549	219 bp upstream
Rr602945	regulatory region 602945	853 bp distal
Rr602946	regulatory region 602946	within coordinates
Rr602947	regulatory region 602947	302 bp distal
Rr602948	regulatory region 602948	within coordinates
Rr602949	regulatory region 602949	282 bp proximal
Rr602950	regulatory region 602950	1176 bp proximal