rs27576018 SNP Detail

Summary

• ID
  rs27576018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACT GTCAGCAAAG TGAAAATGGT
  Y
  CCATCTCACA GACTGAAAAA TGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771151	NES09151259	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	T		C	C	T	T		T
ss147619256	ENSMUSSNP1853576	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321367265	CHEV_4_137323712	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27576018					SNP	C	C	T	T	T	C	T	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771151	NES09151259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1371 bp upstream
Rr602708	regulatory region 602708			1382 bp distal
Rr602709	regulatory region 602709			1138 bp distal
Rr602710	regulatory region 602710			1031 bp proximal
Rr602711	regulatory region 602711			1836 bp proximal
Tssr44134	transcription start site region 44134			1353 bp upstream
Tssr44135	transcription start site region 44135			1331 bp upstream
Tssr44136	transcription start site region 44136			1296 bp upstream
Tssr44137	transcription start site region 44137			1866 bp downstream
Tssr44138	transcription start site region 44138			1897 bp downstream