rs27576017 SNP Detail

Summary

• ID
  rs27576017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGCCTCTT ATGGTATCTT GTACTGTCAG CAAAGTGAAA
  ATGGTCCCAT CTCACAGACT GAAAAATGGA GACTCTCAGT CCCCGTGTGC ACATGTTGAG
  Y
  GCGCGTACAC ACACCACACA CACACACACA CACACACACA ACATAAATAA AAAAATATAA
  TGAACATTTA AAAGAATCAC CTTGCTCTGC CTCCCCTTAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37771150	NES09151261	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27576017					SNP	T	T	C	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771150	NES09151261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495163 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1426 bp upstream
Rr602708	regulatory region 602708			1437 bp distal
Rr602709	regulatory region 602709			1193 bp distal
Rr602710	regulatory region 602710			976 bp proximal
Rr602711	regulatory region 602711			1781 bp proximal
Tssr44134	transcription start site region 44134			1408 bp upstream
Tssr44135	transcription start site region 44135			1386 bp upstream
Tssr44136	transcription start site region 44136			1351 bp upstream
Tssr44137	transcription start site region 44137			1811 bp downstream
Tssr44138	transcription start site region 44138			1842 bp downstream