rs27576013 SNP Detail

Summary

• ID
  rs27576013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCCCGC CTCCCCCCTT
  GCCATCTCTG TCCTTCCCTT TTCCAGATCC CCCTCCCTTT ACTTCTCCTG CAATAAATCT
  TTATTCTAGG CTTGTCAGTG GGTGTGATTC CTGGGGGTGG GGGTGGGGGC ATCTTGGCAG
  GGCCTTCTGA GGTGCTCCCT CCCCCTCCTG CTGCAATATA CCACGTTACA CAGCATAACA
  Y
  TGTGAGCACT TAGTGGACAG GATTAAAGGG ACACTGGGGA AGATGGGTTT ACTGGAGAGA
  TGGCCAACCT CAAGTTGAAA TAGACGGGAT AGATACAGTA ACACACACCT ATTGTCCCAG
  CATTCAGGAA GTTAGTGACT CTAGCCACCT CCCAGGCCCC CAGGAAGAAC AGAAGTGCAG
  CTAGAGACAG CTCCCTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37771146	NES09151266	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576013					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771146	NES09151266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495587 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1850 bp upstream
Rr602708	regulatory region 602708			1861 bp distal
Rr602709	regulatory region 602709			1617 bp distal
Rr602710	regulatory region 602710			552 bp proximal
Rr602711	regulatory region 602711			1357 bp proximal
Tssr44134	transcription start site region 44134			1832 bp upstream
Tssr44135	transcription start site region 44135			1810 bp upstream
Tssr44136	transcription start site region 44136			1775 bp upstream
Tssr44137	transcription start site region 44137			1387 bp downstream
Tssr44138	transcription start site region 44138			1418 bp downstream
Tssr44139	transcription start site region 44139			1672 bp downstream
Tssr44140	transcription start site region 44140			1686 bp downstream
Tssr44141	transcription start site region 44141			1703 bp downstream
Tssr44142	transcription start site region 44142			1712 bp downstream
Tssr44143	transcription start site region 44143			1728 bp downstream
Tssr44144	transcription start site region 44144			1754 bp downstream
Tssr44145	transcription start site region 44145			1779 bp downstream