rs27576012 SNP Detail

Summary

• ID
  rs27576012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTGGGG GTGGGGGTGG
  GGGCATCTTG GCAGGGCCTT CTGAGGTGCT CCCTCCCCCT CCTGCTGCAA TATACCACGT
  TACACAGCAT AACACTGTGA GCACTTAGTG GACAGGATTA AAGGGACACT GGGGAAGATG
  GGTTTACTGG AGAGATGGCC AACCTCAAGT TGAAATAGAC GGGATAGATA CAGTAACACA
  Y
  ACCTATTGTC CCAGCATTCA GGAAGTTAGT GACTCTAGCC ACCTCCCAGG CCCCCAGGAA
  GAACAGAAGT GCAGCTAGAG ACAGCTCCCT TGTCAGCTGG TTCAGAGCTC TCTCTGAGGC
  TAAGGCTGGA GAAAACCTAG CAGAGACAGT AGCTTACAGC CACTGTGCCA AGCGGCTCTG
  CGGAAGGCCA TGGCTTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37771145	NES09151267	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576012					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771145	NES09151267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Gm63526	predicted gene, 63526			1956 bp upstream
Rr602708	regulatory region 602708			1967 bp distal
Rr602709	regulatory region 602709			1723 bp distal
Rr602710	regulatory region 602710			446 bp proximal
Rr602711	regulatory region 602711			1251 bp proximal
Tssr44134	transcription start site region 44134			1938 bp upstream
Tssr44135	transcription start site region 44135			1916 bp upstream
Tssr44136	transcription start site region 44136			1881 bp upstream
Tssr44137	transcription start site region 44137			1281 bp downstream
Tssr44138	transcription start site region 44138			1312 bp downstream
Tssr44139	transcription start site region 44139			1566 bp downstream
Tssr44140	transcription start site region 44140			1580 bp downstream
Tssr44141	transcription start site region 44141			1597 bp downstream
Tssr44142	transcription start site region 44142			1606 bp downstream
Tssr44143	transcription start site region 44143			1622 bp downstream
Tssr44144	transcription start site region 44144			1648 bp downstream
Tssr44145	transcription start site region 44145			1673 bp downstream