rs27576011 SNP Detail

Summary

• ID
  rs27576011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG ACAGCTCCCT TGTCAGCTGG
  Y
  TCAGAGCTCT CTCTGAGGCT AAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771144	NES09151268	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C		T	T	C	C		C
ss147619276	ENSMUSSNP770287	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321367271	CHEV_4_137324398	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27576011					SNP	T	T	C	C	C	T	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771144	NES09151268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495794 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602709	regulatory region 602709			1824 bp distal
Rr602710	regulatory region 602710			345 bp proximal
Rr602711	regulatory region 602711			1150 bp proximal
Tssr44136	transcription start site region 44136			1982 bp upstream
Tssr44137	transcription start site region 44137			1180 bp downstream
Tssr44138	transcription start site region 44138			1211 bp downstream
Tssr44139	transcription start site region 44139			1465 bp downstream
Tssr44140	transcription start site region 44140			1479 bp downstream
Tssr44141	transcription start site region 44141			1496 bp downstream
Tssr44142	transcription start site region 44142			1505 bp downstream
Tssr44143	transcription start site region 44143			1521 bp downstream
Tssr44144	transcription start site region 44144			1547 bp downstream
Tssr44145	transcription start site region 44145			1572 bp downstream