rs27576010 SNP Detail

Summary

• ID
  rs27576010
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137495868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACGGGAT AGATACAGTA
  ACACACACCT ATTGTCCCAG CATTCAGGAA GTTAGTGACT CTAGCCACCT CCCAGGCCCC
  CAGGAAGAAC AGAAGTGCAG CTAGAGACAG CTCCCTTGTC AGCTGGTTCA GAGCTCTCTC
  TGAGGCTAAG GCTGGAGAAA ACCTAGCAGA GACAGTAGCT TACAGCCACT GTGCCAAGCG
  K
  CTCTGCGGAA GGCCATGGCT TTAGCTGCAG TGCCTGGGAG AGGATCTGGA CCTGTCTCAC
  AACCAAGCCA AGTGTCTTTG ATAGTCCTTT TTGGCCAGGG CATTATTCAG TCACTGGCGG
  AAGTTATTTA GGGTCACCCG CTGTGAAGGG CTGGGGAAAG GACGTGGGCT GTGGTCAGAT
  CCCAAAGGAA CTTCTGTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37771143	NES09151269	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576010					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771143	NES09151269	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137495868 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602709	regulatory region 602709			1898 bp distal
Rr602710	regulatory region 602710			271 bp proximal
Rr602711	regulatory region 602711			1076 bp proximal
Tssr44137	transcription start site region 44137			1106 bp downstream
Tssr44138	transcription start site region 44138			1137 bp downstream
Tssr44139	transcription start site region 44139			1391 bp downstream
Tssr44140	transcription start site region 44140			1405 bp downstream
Tssr44141	transcription start site region 44141			1422 bp downstream
Tssr44142	transcription start site region 44142			1431 bp downstream
Tssr44143	transcription start site region 44143			1447 bp downstream
Tssr44144	transcription start site region 44144			1473 bp downstream
Tssr44145	transcription start site region 44145			1498 bp downstream