rs27576009 SNP Detail

Summary

• ID
  rs27576009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137496187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT GAGAGGGTGC ATTGAGTCTT
  Y
  AGGCCTCTGA GAGAACACCA GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771142	NES09151270	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T		C	C	T	T		T
ss147619281	ENSMUSSNP872402	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
ss321367275	CHEV_4_137324791	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27576009					SNP	C	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771142	NES09151270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137496187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602710	regulatory region 602710			within coordinates
Rr602711	regulatory region 602711			757 bp proximal
Tssr44137	transcription start site region 44137			787 bp downstream
Tssr44138	transcription start site region 44138			818 bp downstream
Tssr44139	transcription start site region 44139			1072 bp downstream
Tssr44140	transcription start site region 44140			1086 bp downstream
Tssr44141	transcription start site region 44141			1103 bp downstream
Tssr44142	transcription start site region 44142			1112 bp downstream
Tssr44143	transcription start site region 44143			1128 bp downstream
Tssr44144	transcription start site region 44144			1154 bp downstream
Tssr44145	transcription start site region 44145			1179 bp downstream