rs27576004 SNP Detail

Summary

• ID
  rs27576004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137496662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGAAGA GGCAGCCCGG
  CAGCCCGAGG GCAACACCGG GCCAGGCTGC AGGGGTGAAC CTTGTCTCTG CCCCTCAAGC
  TAGATAACCT GGGGTGAGAA ATCTCACCCT TTCTGCACCG GGCCACTCCC TTGTGGAGTT
  GAGAGTCTGA GAGAGACTTG GGGTTGCCAT AAAGATTCCG GCCATTTTAT CTGTAGCAAA
  R
  GCTCAACCTG AACGTGGGGC AGGCAGGTGT GAGTGTAGGG AAGTGGGAAG GGAGAATGAA
  GGAGACAGAG GAGAGCTGGG TAGACACACA CAGACACACA CAGACACACA GACACACAGA
  CACACACACA CACACACACA CACACACACA CACAGAGCTT GCCCACGGAC CTGCTCACCT
  GAGGCTGAAA TGGTCTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37771137	NES09151279	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576004					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771137	NES09151279	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137496662 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				Noncoding-Transcript-Variant
Rr602710	regulatory region 602710			96 bp distal
Rr602711	regulatory region 602711			282 bp proximal
Rr602712	regulatory region 602712			1553 bp proximal
Tssr44137	transcription start site region 44137			312 bp downstream
Tssr44138	transcription start site region 44138			343 bp downstream
Tssr44139	transcription start site region 44139			597 bp downstream
Tssr44140	transcription start site region 44140			611 bp downstream
Tssr44141	transcription start site region 44141			628 bp downstream
Tssr44142	transcription start site region 44142			637 bp downstream
Tssr44143	transcription start site region 44143			653 bp downstream
Tssr44144	transcription start site region 44144			679 bp downstream
Tssr44145	transcription start site region 44145			704 bp downstream