rs27576000 SNP Detail

Summary

• ID
  rs27576000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137496955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT CCCATCTCAT TCTCACTGGG
  Y
  TCTTCTCACA AGCCCCAGGC AGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37771133	NES09151200	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	T	C		T	C	C	C		T	T	C	C		C
ss45658998	mCV24783700	ABI	CRAMUS_MOUSE	f	SNP								T		C
ss147619325	ENSMUSSNP2253432	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321367288	CHEV_4_137325559	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27576000					SNP	T	T	C	C	C	T	C	T	T	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37771133	NES09151200	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137496955 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpl	alkaline phosphatase, liver/bone/kidney			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr602710	regulatory region 602710			389 bp distal
Rr602711	regulatory region 602711			within coordinates
Rr602712	regulatory region 602712			1260 bp proximal
Tssr44137	transcription start site region 44137			19 bp downstream
Tssr44138	transcription start site region 44138			50 bp downstream
Tssr44139	transcription start site region 44139			304 bp downstream
Tssr44140	transcription start site region 44140			318 bp downstream
Tssr44141	transcription start site region 44141			335 bp downstream
Tssr44142	transcription start site region 44142			344 bp downstream
Tssr44143	transcription start site region 44143			360 bp downstream
Tssr44144	transcription start site region 44144			386 bp downstream
Tssr44145	transcription start site region 44145			411 bp downstream