rs27575180 SNP Detail

Summary

• ID
  rs27575180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138450863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCCAGAA ATGCCTGCCC
  CTTCCCTTGC TCATTTATTT TCTGATCAAC CATAAAGTTT TTTTTCCCTA TGAGTTTCTC
  GTTCGGAGTG GCAGGAGAAA GCCATAGCTG TCCAGCTGAG GCGAGGATAA GCCTCTAGCT
  GAGCTTCCAT CCTTCTCACT TGGGAATGGC TATTAATTTG CCACAGCTTC CACAGAATTA
  K
  CACAGGCTTG GCTTCCAACA CCCACACATG CCTGGGGAAG GTTTGGCTGT CAGGAAGTTT
  GGTAACTTAG AAACCTCTCC CTAACAACTT CGATGAGAAA AGTCATGCGT TCTCCCAGGC
  ACTCTGCGGG GTTATTTTTA ACAGTCAAAC TTGAGTGTGT GCGTGTCGTT GCTATACCTT
  TTGGTACTCT GTATAATTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37767207	NES09132132	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27575180					SNP	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767207	NES09132132	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138450863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			1773 bp upstream
Rr602997	regulatory region 602997			within coordinates
Rr602998	regulatory region 602998			457 bp proximal
Rr602999	regulatory region 602999			1144 bp proximal
Rr603000	regulatory region 603000			1294 bp proximal
Rr603001	regulatory region 603001			1784 bp proximal
Tssr39875	transcription start site region 39875			1730 bp upstream
Tssr44173	transcription start site region 44173			1658 bp downstream
Tssr44174	transcription start site region 44174			1710 bp downstream
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant