rs27575179 SNP Detail

Summary

• ID
  rs27575179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138451819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA ATCTAAACCT ACAGCGCAAG
  S
  AGCAAAATAC ACCCTCCTAC GAACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767206	NES09132133	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	C	C	C		C	C		C
ss321376512	CHEV_4_138280423	CHEVERUD	SCREENING_POP	f	SNP								G			G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575179					SNP	G	C	G	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767206	NES09132133	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138451819 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			817 bp upstream
Rr602997	regulatory region 602997			734 bp distal
Rr602998	regulatory region 602998			164 bp distal
Rr602999	regulatory region 602999			188 bp proximal
Rr603000	regulatory region 603000			338 bp proximal
Rr603001	regulatory region 603001			828 bp proximal
Rr603002	regulatory region 603002			1208 bp proximal
Tssr39875	transcription start site region 39875			774 bp upstream
Tssr44173	transcription start site region 44173			702 bp downstream
Tssr44174	transcription start site region 44174			754 bp downstream
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant