rs27575178 SNP Detail

Summary

• ID
  rs27575178
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138451827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC CTACAGCGCA AGCAGCAAAA
  K
  ACACCCTCCT ACGAACCATC TGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767205	NES09132134	PERLEGEN	MM_PANEL2	f	SNP			G	G		T	G	G	G		G	G		G
ss45687049	mCV24059554	ABI	CRAMUS_MOUSE	f	SNP	T	T			T		G
ss147655240	ENSMUSSNP6050277	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					G
ss321376513	CHEV_4_138280431	CHEVERUD	SCREENING_POP	f	SNP										G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575178					SNP	T	T	G	G	T	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767205	NES09132134	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138451827 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			809 bp upstream
Rr602997	regulatory region 602997			742 bp distal
Rr602998	regulatory region 602998			172 bp distal
Rr602999	regulatory region 602999			180 bp proximal
Rr603000	regulatory region 603000			330 bp proximal
Rr603001	regulatory region 603001			820 bp proximal
Rr603002	regulatory region 603002			1200 bp proximal
Tssr39875	transcription start site region 39875			766 bp upstream
Tssr44173	transcription start site region 44173			694 bp downstream
Tssr44174	transcription start site region 44174			746 bp downstream
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant