rs27575177 SNP Detail

Summary

• ID
  rs27575177
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138454095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACAGAGC AAGTTCAAGA
  ACAGTCATGA CTACATAGGG AGACCCTGTC TCAAAAACAA AACAAAACAA ACAAACAAGA
  AAAAAAAAAC TGCTTTAAAA GGAGTCCCGT TGGACTCTGC TCTAGACAGA CCCTTAGAGT
  AATTTAGTGA TTGAACTAGT AGAAGTTAAC TAATAGACAG TTAAGAACCA CAGATTCACT
  W
  CCTAACTTCA TGGCCACATC TTTGTTACCT GCTTCATGCA GGGATAGGAT TTTGATATGA
  GCAGAGTTCT AAGGCCTTGT CAGCACATCC ACAGTTGGGT TGGAAAGACA CATTGCTCAT
  GGATAGAATT GTAAAGAATA CCGTTTTCAG TAAAGTTTGA GCCAAGGGAA GGAGAGCCTG
  TTGGATGCGA TCATGTATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37767204	NES09132035	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27575177					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767204	NES09132035	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138454095 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr602999	regulatory region 602999	1982 bp distal
Rr603000	regulatory region 603000	1449 bp distal
Rr603001	regulatory region 603001	1197 bp distal
Rr603002	regulatory region 603002	497 bp distal
Tssr39875	transcription start site region 39875	1475 bp downstream
Tssr44173	transcription start site region 44173	1526 bp upstream
Tssr44174	transcription start site region 44174	1517 bp upstream
Ubxn10	UBX domain protein 10	Intron