rs27575175 SNP Detail

Summary

• ID
  rs27575175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138454253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAAGTTA ACTAATAGAC
  AGTTAAGAAC CACAGATTCA CTACCTAACT TCATGGCCAC ATCTTTGTTA CCTGCTTCAT
  GCAGGGATAG GATTTTGATA TGAGCAGAGT TCTAAGGCCT TGTCAGCACA TCCACAGTTG
  GGTTGGAAAG ACACATTGCT CATGGATAGA ATTGTAAAGA ATACCGTTTT CAGTAAAGTT
  Y
  GAGCCAAGGG AAGGAGAGCC TGTTGGATGC GATCATGTAT GCTGTGCTTG GTGCCACTGG
  CACTTTCCTT GAGAGCTGGC ATGGAGGAGT TCATTTCAGT GATGGGCTGT TAGCCCATCT
  CAGAGAGGAA GCTGCTGACC CCGGGAGAGC ACCTGGCCGT GGAGCGGAGC CTGCACTAGG
  CTGGCCTCCT TTCTGGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37767202	NES09132037	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27575175					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767202	NES09132037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138454253 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603000	regulatory region 603000	1607 bp distal
Rr603001	regulatory region 603001	1355 bp distal
Rr603002	regulatory region 603002	655 bp distal
Rr603003	regulatory region 603003	1995 bp proximal
Tssr39875	transcription start site region 39875	1633 bp downstream
Tssr44173	transcription start site region 44173	1684 bp upstream
Tssr44174	transcription start site region 44174	1675 bp upstream
Ubxn10	UBX domain protein 10	Intron