rs27575173 SNP Detail

Summary

• ID
  rs27575173
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138454543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT TGCTTTGCGT CGTAAGAGTT
  K
  CTGACTTACA TCTTGTTAAT GAATC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37767200	NES09132039	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	T		T	T	T	T		G	G	T		T
ss45698939	mCV24059847	ABI	CRAMUS_MOUSE	f	SNP		G	G				G		T
ss147655323	ENSMUSSNP72795	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						T
ss321376530	CHEV_4_138283147	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27575173					SNP	G	G	G	T	G	T	G	T	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767200	NES09132039	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138454543 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603000	regulatory region 603000	1897 bp distal
Rr603001	regulatory region 603001	1645 bp distal
Rr603002	regulatory region 603002	945 bp distal
Rr603003	regulatory region 603003	1705 bp proximal
Tssr39875	transcription start site region 39875	1923 bp downstream
Tssr44173	transcription start site region 44173	1974 bp upstream
Tssr44174	transcription start site region 44174	1965 bp upstream
Ubxn10	UBX domain protein 10	Intron