rs27575160 SNP Detail

Summary

• ID
  rs27575160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138455873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTAGCGG TCTTGGCCTG
  GCGCCTGGCA CAGGGCACTA CTTTGTACTT CTTACCTGAC ACTCTCCTTC GGGTGTGGTG
  ATAACACTGC CTAAGGGCAG GAACTTGCTT GTCCTCCCTC AGTCCCACGC TTAGCCCTCA
  TAAAGCCTAC TTGTGGCAGA TGCCCAACAA ATGAGAAATT GTTGGTGACA TTGATTCTGA
  Y
  GAAAAGACCC ACAAGCACCC CAAGGCTAAC TAATTTGGAA TGTAAATGGC CTCCCTTGGG
  ACTGGCTGAA GGCAAGCCCT CCAGATTTTG TGGTTTGGGT TGGGTTTTTT TTTGTTTGGT
  TGGTTTTGTT TTGTTTTTTT GTTTGTTTGT TTGTTTTTGT TTTTTTCCAG TTTGTTCCCA
  GAGAGTCTGT AGGCCTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37767187	NES09131976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27575160					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767187	NES09131976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138455873 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603003	regulatory region 603003	375 bp proximal
Ubxn10	UBX domain protein 10	Intron