rs27575154 SNP Detail

Summary

• ID
  rs27575154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138456989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCGGAAC AGCACTCCAG
  GCCCCTTTGT TTGGGAAGTC ACCTGCTGGT TCAAAAGCTT TGAGTCCTTT CTTTGTAGCC
  CAAACCCAGG CCTGGTTTTG TCAGGTTCCC ATGGAGACAG AACTTAATTA GTAAAGCTTG
  TACAGCTGTC GAAATGATGG TTGGCCAGGA ACAGCCTGGT CAGGACCCCA CAGCCTCTCA
  R
  CATCCTTCAA CGTTGTACCA AAGAAGGCAG AGCAGCTGGG ACACCAGGTG AGCTCTCCCA
  GAGCTCTTGC CATAGGTCTG ACATTTTGAC ATTTTCCTGG GAAAGTTGAC CACAGAATGA
  AAACCTTTCC AAAGCTTTGG ACCTGCCAAG TTCCCATGAC TCCGATGTTG TGACTCTGTT
  GTGCCCTCTT CGGGACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37767181	NES09131932	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27575154					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767181	NES09131932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138456989 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	1684 bp downstream
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603003	regulatory region 603003	within coordinates
Ubxn10	UBX domain protein 10	Intron