rs27575099 SNP Detail

Summary

• ID
  rs27575099
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138463098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGATCCTG GCCCAGAACA AAGATCTACC CACTCCTAGG
  TCCGCCTCCT GTCCTTCCCA CGCCCTATAG GAGGACCAAA GGTAGACTCA ATCCTGCACA
  M
  CATTAGCCCA GGCCACAGAG AGCCAAGAGC ACATTTATAT ATGGGGACAG CCATAAAAGG
  ACAAACGCAT CAGTAACTCA CCTCTGCAAC TCCAGTGCCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss37767126	NES09131690	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs27575099					SNP	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767126	NES09131690	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138463098 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57720	predicted gene, 57720			within coordinates
Pla2g2c	phospholipase A2, group IIC			Intron
Rr603004	regulatory region 603004			110 bp proximal
Rr603005	regulatory region 603005			184 bp proximal
Rr603006	regulatory region 603006			1213 bp proximal
Rr603007	regulatory region 603007			1370 bp proximal
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant