rs27575098 SNP Detail

Summary

• ID
  rs27575098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138463138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA GAGCCAAGAG CACATTTATA
  Y
  ATGGGGACAG CCATAAAAGG ACAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767125	NES09131691	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	C		C	C	C	C		T	T	C	C		C
ss45636305	mCV24059894	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss147655615	ENSMUSSNP6701110	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321376625	CHEV_4_138291742	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575098					SNP	T	T	T	C	C	T	C	T	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767125	NES09131691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138463138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57720	predicted gene, 57720			within coordinates
Pla2g2c	phospholipase A2, group IIC			Intron
Rr603004	regulatory region 603004			70 bp proximal
Rr603005	regulatory region 603005			144 bp proximal
Rr603006	regulatory region 603006			1173 bp proximal
Rr603007	regulatory region 603007			1330 bp proximal
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant