rs27575091 SNP Detail

Summary

• ID
  rs27575091
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138465004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAGC CTTTGCCGCC GAGGCCTAGG
  S
  CAACCCTCTG CCCTTCCTCT GCTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767118	NES09131659	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	C	G	C		C	C	C	C		G	G	C	C		C
ss45575617	mCV24059904	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		C
ss147655643	ENSMUSSNP7089985	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								C
ss321376632	CHEV_4_138293608	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575091					SNP	G	G	G	C	C	G	C	G	C	C	C	C	C	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767118	NES09131659	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138465004 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603004	regulatory region 603004	1775 bp distal
Rr603005	regulatory region 603005	1701 bp distal
Rr603006	regulatory region 603006	537 bp distal
Rr603007	regulatory region 603007	136 bp distal
Rr603008	regulatory region 603008	1396 bp proximal
Ubxn10	UBX domain protein 10	Intron