rs27575090 SNP Detail

Summary

• ID
  rs27575090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138465079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAG TAGGAGATTG TCTTCAGCTC AGGCTGCCTA ATAGCCCTGC ACAGCTGGCA
  GAGGGACCTG AAACATAAAG CGAGCCTTTG CCGCCGAGGC CTAGGGCAAC CCTCTGCCCT
  TCCTCTGCTC CCTGCCGGCT CAGGAGGGTG AGGTAGGACT GGAAACTGTA CCTCCGGGCC
  Y
  AGAACTCCAG GAGATGGGAA AAGTATAAGA AGTTATCCAT TGACAGGTGA CAGTCATAGC
  AGATGGCACA TCCGTGTTTG GCATGTGCTA GCTAGTGACA GGAGACAGAG GCAGGACCTG
  GGAGCTTCCC CACTGCAGCC CACGAGTCTT GCCTCATGCT CCCCAGATGA GAGGCCTGCC
  CAGAGCTCTG GAAAATGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37767117	NES09131661	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27575090					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767117	NES09131661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138465079 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603004	regulatory region 603004	1850 bp distal
Rr603005	regulatory region 603005	1776 bp distal
Rr603006	regulatory region 603006	612 bp distal
Rr603007	regulatory region 603007	211 bp distal
Rr603008	regulatory region 603008	1321 bp proximal
Ubxn10	UBX domain protein 10	Intron