rs27575087 SNP Detail

Summary

• ID
  rs27575087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138465391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GCTAAGGAGT GAGTGACGTG
  Y
  AGAAACAGCC TTTGTTGGAT AAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767114	NES09131668	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	C	C	C	C	C		T	T	C		C
ss45576890	mCV24060171	ABI	CRAMUS_MOUSE	f	SNP		T							C
ss147655663	ENSMUSSNP3929312	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321376637	CHEV_4_138293995	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575087					SNP	T	T	T	C	C	T	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767114	NES09131668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138465391 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603006	regulatory region 603006	924 bp distal
Rr603007	regulatory region 603007	523 bp distal
Rr603008	regulatory region 603008	1009 bp proximal
Ubxn10	UBX domain protein 10	Intron