rs27575086 SNP Detail

Summary

• ID
  rs27575086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138465462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCTGGA AAATGAGGAG
  ACTTCCCCCA GACACCCCCA GGGCATCAGT GTCACCCTCC AGGGAGCCTA GAACCATGTG
  GCCTGGGTTC TGATGTCCCG CCTGCTGCTG CTAAGGAGTG AGTGACGTGT AGAAACAGCC
  TTTGTTGGAT AAGCATCTAC TGCCACTGTG GTTCCAAAGC CAGACACAGA GCGAGGCAGG
  Y
  CCAGCTCCTG CTCTCCTGAG AAACTTCAGA GCAGAAAAAT GCCCTCGGAG ACTATCCCAG
  CCAACCTCTG CTACACACCT GGAAGTCTGA GCCCCATGGA AGGGAAGGGC TTGATCCGAG
  TGAGCGACCA GCAAGATCAA GACTTGCATG CCGGGCCTCC CCAGTGCTCT GCACCTTCTT
  CTCTGGCTTG AGCCGTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ
ss37767113	NES09131670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ
rs27575086					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767113	NES09131670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138465462 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603006	regulatory region 603006	995 bp distal
Rr603007	regulatory region 603007	594 bp distal
Rr603008	regulatory region 603008	938 bp proximal
Ubxn10	UBX domain protein 10	Intron