rs27575083 SNP Detail

Summary

• ID
  rs27575083
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138465729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTACAC ACCTGGAAGT
  CTGAGCCCCA TGGAAGGGAA GGGCTTGATC CGAGTGAGCG ACCAGCAAGA TCAAGACTTG
  CATGCCGGGC CTCCCCAGTG CTCTGCACCT TCTTCTCTGG CTTGAGCCGT GTGGGCCTCG
  GTTTTCTCAC CCTCACCCAT GAGGTGAGAG CAGTGGCTAC CCCAGTGTAA AGCTGACTGC
  S
  TGCTTTGCAC CCCTGTCCTC GGCTCCCAGG ACAGACCTCT GAGATAGGCA CTTTTCTCCC
  CATTATTGCA TAGGATGTCA AGGCTCACCC AGCCAGGGAA AGGATGGAGA TTTGGGCCCA
  GGTGGTCCTG CCTCCCTGAT ACCCTGCCCA AAGGCTAGGC ATCTACTTGA TGAGAGGGTT
  ATTATCCAAT TGCAAGTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37767110	NES09131674	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27575083					SNP	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767110	NES09131674	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138465729 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603006	regulatory region 603006	1262 bp distal
Rr603007	regulatory region 603007	861 bp distal
Rr603008	regulatory region 603008	671 bp proximal
Ubxn10	UBX domain protein 10	mRNA-UTR