rs27574378 SNP Detail

Summary

• ID
  rs27574378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132483316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT CTGGACTACA TCTACCTCCT
  R
  TTTCTGAGTT GTAATTCAAA AAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758020	NES09168960	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	G		G	A	A	A		A
ss147477861	ENSMUSSNP4887675	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss321336210	CHEV_4_132311920	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574378					SNP	G	G	A	A	A	A	A	G	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758020	NES09168960	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132483316 () rs orientation: forward

Symbol	Name	Function Class
Rr601061	regulatory region 601061	1450 bp distal
Rr601062	regulatory region 601062	1251 bp distal
Rr601063	regulatory region 601063	532 bp proximal
Rr601064	regulatory region 601064	1237 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	1099 bp downstream
Tssr43703	transcription start site region 43703	1102 bp downstream
Tssr43704	transcription start site region 43704	1157 bp downstream
Tssr43705	transcription start site region 43705	1224 bp downstream
Tssr43706	transcription start site region 43706	1243 bp downstream