rs27574376 SNP Detail

Summary

• ID
  rs27574376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132483712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCACCT TGGAATACTA
  TGCCTTTAAA AATCAAAAAC AAAACCTGGA TTACTGTGAT TATCGTGTCA TCCCAGCTGA
  GGGAATGTTT CTTCCTTTAA GTCCTGATTT TTTTTTTTCC TGGTTTCTTT CTGTCTTCCT
  GGTTCCTACA CTCATCCAGG GTACAGAGAT GGGCTTCTAA CTAATGCTTT TGTGTTTATG
  Y
  TTGTTTGAGG TTTGGTTTTG TTTTCTTTTA CATTTATCTA TTGGGTGGAC AGACACCACA
  GAAGACAAAT TGCAGAAATA AGATTTTCTC CTTCCACCGT ATGGGTTTGG GGAACTGGAC
  CTCTCGGTGG CAATGTTTTG TGTTTCTTTT CTGGAGTCCC AGAGATGGAA CGCGCTCATT
  TGAACAACCA CTGTACCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758018	NES09168950	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T		T	T	T		C
ss147477869	ENSMUSSNP2994321	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321336212	CHEV_4_132312316	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574376					SNP	C	C	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758018	NES09168950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132483712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	502 bp proximal
Gm70165	predicted gene, 70165	1801 bp upstream
Rr601061	regulatory region 601061	1846 bp distal
Rr601062	regulatory region 601062	1647 bp distal
Rr601063	regulatory region 601063	136 bp proximal
Rr601064	regulatory region 601064	841 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	Intron
Tssr43702	transcription start site region 43702	703 bp downstream
Tssr43703	transcription start site region 43703	706 bp downstream
Tssr43704	transcription start site region 43704	761 bp downstream
Tssr43705	transcription start site region 43705	828 bp downstream
Tssr43706	transcription start site region 43706	847 bp downstream