rs27574371 SNP Detail

Summary

• ID
  rs27574371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAACGGT TCCCGGCAGC
  ACAGACCCCA GCCCCAGTTC CTAGAACGAA ACAAAAATCA AGCAGGTTTC CCCCGCAGCC
  CTACCTAGTT GAGCCCCTGC GACTCCCCAG GGGGCCAGGA ATATCAGCCA CCCGAGCAGC
  GTCATCCTCT GGATCCCCCC ACGGCGGGCG GCCGAAGCTC CTCCAAGTCC GTCTGCGCCG
  Y
  GGGTTCCCAC CTTGTGGCCA GCCACGTGTC TGGGCAGAAC TACTCGTTTG GCTGCTTCCA
  GTGTTCCAAG TTATCCTTGG CGGATGGCTG CTCTTGCTTT TCCCTCTCTT GCCCAGCAGG
  GCGTGCGCTT GATTGGAGGA GGGACGCACC AGTGAGCGCT GGAATAGCTT GTAGGTCTCT
  GTGGAAACCG CATCTGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758013	NES09168933	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss321336220	CHEV_4_132313016	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574371					SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758013	NES09168933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	within coordinates
Gm70165	predicted gene, 70165	1101 bp upstream
Rr601063	regulatory region 601063	within coordinates
Rr601064	regulatory region 601064	141 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	mRNA-UTR
Tssr43702	transcription start site region 43702	3 bp downstream
Tssr43703	transcription start site region 43703	6 bp downstream
Tssr43704	transcription start site region 43704	61 bp downstream
Tssr43705	transcription start site region 43705	128 bp downstream
Tssr43706	transcription start site region 43706	147 bp downstream