rs27574370 SNP Detail

Summary

• ID
  rs27574370
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGTTGA GCCCCTGCGA
  CTCCCCAGGG GGCCAGGAAT ATCAGCCACC CGAGCAGCGT CATCCTCTGG ATCCCCCCAC
  GGCGGGCGGC CGAAGCTCCT CCAAGTCCGT CTGCGCCGCG GGTTCCCACC TTGTGGCCAG
  CCACGTGTCT GGGCAGAACT ACTCGTTTGG CTGCTTCCAG TGTTCCAAGT TATCCTTGGC
  S
  GATGGCTGCT CTTGCTTTTC CCTCTCTTGC CCAGCAGGGC GTGCGCTTGA TTGGAGGAGG
  GACGCACCAG TGAGCGCTGG AATAGCTTGT AGGTCTCTGT GGAAACCGCA TCTGTGTTGC
  AAGGTGCTGT GTTGGAGTTC CCCGACTTTT CGAAAGAAAT TCATAAGTAC TTAGGAGCAA
  AATGATAGGA TCTTCGAGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758012	NES09168934	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27574370					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758012	NES09168934	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	within coordinates
Gm70165	predicted gene, 70165	1019 bp upstream
Rr601063	regulatory region 601063	within coordinates
Rr601064	regulatory region 601064	59 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	mRNA-UTR
Tssr43702	transcription start site region 43702	76 bp upstream
Tssr43703	transcription start site region 43703	31 bp upstream
Tssr43704	transcription start site region 43704	within coordinates
Tssr43705	transcription start site region 43705	46 bp downstream
Tssr43706	transcription start site region 43706	65 bp downstream