rs27574369 SNP Detail

Summary

• ID
  rs27574369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTGCGA CTCCCCAGGG
  GGCCAGGAAT ATCAGCCACC CGAGCAGCGT CATCCTCTGG ATCCCCCCAC GGCGGGCGGC
  CGAAGCTCCT CCAAGTCCGT CTGCGCCGCG GGTTCCCACC TTGTGGCCAG CCACGTGTCT
  GGGCAGAACT ACTCGTTTGG CTGCTTCCAG TGTTCCAAGT TATCCTTGGC GGATGGCTGC
  Y
  CTTGCTTTTC CCTCTCTTGC CCAGCAGGGC GTGCGCTTGA TTGGAGGAGG GACGCACCAG
  TGAGCGCTGG AATAGCTTGT AGGTCTCTGT GGAAACCGCA TCTGTGTTGC AAGGTGCTGT
  GTTGGAGTTC CCCGACTTTT CGAAAGAAAT TCATAAGTAC TTAGGAGCAA AATGATAGGA
  TCTTCGAGGT ACGCTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758011	NES09168935	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T		T	T	T	T		C
ss147477890	ENSMUSSNP1769026	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss321336221	CHEV_4_132313108	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574369					SNP	C	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758011	NES09168935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	within coordinates
Gm70165	predicted gene, 70165	1009 bp upstream
Rr601063	regulatory region 601063	within coordinates
Rr601064	regulatory region 601064	49 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	mRNA-UTR
Tssr43702	transcription start site region 43702	86 bp upstream
Tssr43703	transcription start site region 43703	41 bp upstream
Tssr43704	transcription start site region 43704	6 bp upstream
Tssr43705	transcription start site region 43705	36 bp downstream
Tssr43706	transcription start site region 43706	55 bp downstream