rs27574368 SNP Detail

Summary

• ID
  rs27574368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTGCTC TTGCTTTTCC
  CTCTCTTGCC CAGCAGGGCG TGCGCTTGAT TGGAGGAGGG ACGCACCAGT GAGCGCTGGA
  ATAGCTTGTA GGTCTCTGTG GAAACCGCAT CTGTGTTGCA AGGTGCTGTG TTGGAGTTCC
  CCGACTTTTC GAAAGAAATT CATAAGTACT TAGGAGCAAA ATGATAGGAT CTTCGAGGTA
  Y
  GCTTTAAAGT TTTCTAGTCG AATTGAAGGC ATTTCGGTTC AGTCAGCCTC CAGAAAATGC
  AGGAAGCACC ATCGACTTAC TGTCTTCTCC TTGCAGAGCT GCAACACGGA TGGATGAATG
  AATTAGCTAC CTGTGGCAAC CAAAGAGCCT TAAAAGCTAG CCTTAAAACC AGATGTGCAA
  GCCCTCTCTC AAGGATAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758010	NES09168936	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss147477910	ENSMUSSNP4727581	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss321336226	CHEV_4_132313300	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574368					SNP	T	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758010	NES09168936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	54 bp distal
Gm70165	predicted gene, 70165	817 bp upstream
Rr601063	regulatory region 601063	144 bp distal
Rr601064	regulatory region 601064	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	138 bp upstream
Tssr43702	transcription start site region 43702	278 bp upstream
Tssr43703	transcription start site region 43703	233 bp upstream
Tssr43704	transcription start site region 43704	198 bp upstream
Tssr43705	transcription start site region 43705	145 bp upstream
Tssr43706	transcription start site region 43706	126 bp upstream