rs27571967 SNP Detail

Summary

• ID
  rs27571967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131820895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAGGGC TAGCAAGAAC
  TCCAGGAGAT AGGATGGGTA GAGGGAGTTG AATTGCTCCC CTGCCCCGCC CCCCATGCTT
  TCCGGAACTA CATTGTTACT AAGTCTCTAT ACCTTACAAA ATAAGCTGGT TTCCTAAATC
  TAAAGCTCCC TGCAAGCCAT GCCTTCCATC GTGCACTGAA CTTACCATCC CATGATGTAC
  Y
  GCTACCTTTT GCCTGGCTGA CTTACGACCT CATGATGTAT GATTGTCCTT TGTCTTACAA
  AATATGTTTT CACAGACTGG AGAGAGGACT CAGCAGTTAA GTGCACTGGC TTCTCCTTTA
  GAGGACCGAG GTTTGATTCC CAGCATCCAC ATGGTAGCTC ACAACTATCT GTTACTCCAG
  TCCCAGGAGA TCTGAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37747384	NES09171062	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571967					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747384	NES09171062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131820895 () rs orientation: forward

Symbol	Name	Function Class
Gm13214	predicted gene 13214	307 bp upstream
Rr600873	regulatory region 600873	78 bp distal
Rr600874	regulatory region 600874	1033 bp proximal
Rr600875	regulatory region 600875	1563 bp proximal