rs27571964 SNP Detail

Summary

• ID
  rs27571964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131822368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTTAT TTACTTTCTG
  TATATGAGCA CACTATCTGT CTTCAGATGC ATCAGATCCC ATTATAGACC TCTAAAACTG
  GAAAAACCAG TGTCCATGTC CACCCTGACT CCCTGATTTC TCTAATGCTT TTTCAATAAC
  GGCCCCCATT TGGAGTGACA CACTAAAGAT TCTCCTCAGA GGAGAGAGAG CAGATTCTCA
  Y
  AAAGGCTGCT GAGGCAATCC CTGGAAGAGC CTTGGTGCCT GGCAAATTCT CCGAGGGAAA
  TAGGGGTCAC ACCGTGATAC TTCCAGACTC TGAAAGGAGA ATGAAAGGGG CAGAGTGACT
  AATCTGTCTG AGGCAGCTAC AGCAGGGCCC AGACTTGCCT TCAGTTCTCC TGAACGCCTC
  CTGGAAGCTT ATCAGCTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747380	NES09170990	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C		C	T	T	T		T
ss321330500	CHEV_4_131650972	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27571964					SNP	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747380	NES09170990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131822368 () rs orientation: forward

Symbol	Name	Function Class
Gm13214	predicted gene 13214	759 bp downstream
Rr600873	regulatory region 600873	1551 bp distal
Rr600874	regulatory region 600874	419 bp distal
Rr600875	regulatory region 600875	90 bp proximal