rs27571962 SNP Detail

Summary

• ID
  rs27571962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131822845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtcagagct gttagaaata gcccagtcgg
  tatttgacga ctgagGCAGT AAAGAAGACt gtcttagtta aaggtttcta ttgctgtgaa
  gagacactgt tcatagtcac acaagttcaa gaagcaggaa gcagtctaaA GTGTTGGACA
  Y
  AACAGCCACA CTCTTGTTCC ACCTTCACCC CTTCCTAGCT CCTCATTTTT AATTTAACAA
  AAAGGTAGGA ATTTTAGCTT ATGGGTGATT CTACGAGGCT GCCCTCAGGG AACTAGTATT
  TATTTACGTC ATCATCGGcc accaccacca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747378	NES09170974	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T		T	C	C	C		C
ss321330503	CHEV_4_131651449	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27571962					SNP	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747378	NES09170974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131822845 () rs orientation: forward

Symbol	Name	Function Class
Gm13214	predicted gene 13214	1236 bp downstream
Rr600874	regulatory region 600874	896 bp distal
Rr600875	regulatory region 600875	32 bp distal