rs27571805 SNP Detail

Summary

• ID
  rs27571805
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131857917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGGGAAGA ACAGTATCCG GTGCCTGCTT
  TGATGGGACA CAGGGGTCAC TGTTGCCAAC CATCAGAGAA AATCTCCCTG GAGGAGAGAG
  TTACTTGATA AAGGAAGTGA AAAGACAGTG CCCTGGAGGG GTGGTGGCCT GCCATTCTCG
  M
  GTGGCTCCTG TCCCTTTTAT CTGGCGGCTG GTGAGTTTCT GTTTGTAGAG CCCAGAAACT
  CTACCGATGG ATCCAAGTGG CTGTTAGAGA CTTAAGAACT ATTTAGTGAT GGCTTCTTAG
  GGCCAAAGGC CCGAGTGAGC TAGGAACAGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747221	NES09170042	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	A		A	C	C	C		C
ss321330898	CHEV_4_131686521	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27571805					SNP	C	C	C	C	A	C	C	C	C	A	C	A	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747221	NES09170042	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131857917 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr377201	regulatory region 377201	679 bp downstream
Rr600880	regulatory region 600880	808 bp distal
Rr600881	regulatory region 600881	1721 bp proximal