rs27571803 SNP Detail

Summary

• ID
  rs27571803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131858528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGCTTGTC CACCTTATTC
  GTTGAGACAA CATTTCTCAA GGAGCCTGGA GTTCACCTTT CAGCTAGGCT GGCTGGCCCG
  TGAGCCCCTG GGACCTGCCT ATCTCTGCCC ATGTCTCTGT CTCTGCCTAG CACTGGGGAC
  ACAGAGGCTG TTACGTTTCT GTGGGGGTTC TGAGCCATCT CCCCAACCTG ATAAGCACAG
  R
  CTTTTGTCTA TGTCTCTCCT ATCGTTTGAA GGGATCTCAG AGTTCCCACA GTGAGTGATG
  TAGTAAGAGG AAACAACCAG ATACGGTGTT GGGGAAGGAG CTTTAAGAAG TGAACAGGGA
  GCTGGGCGTG GTGGCGCACG CCTTTAATTT CAGCACTCGA GAGGCAGAGG CAGGCGGATT
  TCCTGCCTCT TTTAAGTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747219	NES09170020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A		A	G	G	G		G
ss321330901	CHEV_4_131687132	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27571803					SNP	G	G	G	G	A	G	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747219	NES09170020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131858528 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr377201	regulatory region 377201	1290 bp downstream
Rr600880	regulatory region 600880	1419 bp distal
Rr600881	regulatory region 600881	1110 bp proximal