rs27571801 SNP Detail

Summary

• ID
  rs27571801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131859053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTTTTTT TTTCCCCCTG GTCTATTCAA
  CACAAAACAA TGTCCTCCCT TTTTATGGAG GTGGCTGATG ACATCCATGG CTGAATCTCT
  GTCTGACCTG GAATTCAGTA GCTGACCTAG GCCCAGCCTT AGCTCCGGTC TCAGGATGGC
  K
  CTGGCCAGCA TGATGTCAGG CATGGTCACA GAAGGAGGTA ATCACAGCCA TACTGGGGAC
  TTTGTGGGTA AGGGACCAGT AGAAATGTCT CCAAGCAAAC CTTTCCTGGC TGGAGCCTGG
  AGACTTGCGA GGATACACAG CTTCGTGATC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747217	NES09170000	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	G		G		T	T	T		T
ss147473482	ENSMUSSNP7135230	ENSEMBL	ENSEMBL_Sanger	f	SNP		T											G
ss321330905	CHEV_4_131687657	CHEVERUD	SCREENING_POP	f	SNP											T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27571801					SNP	T	T	T	T	G	T	T	T	T	G	T	G	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747217	NES09170000	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131859053 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr377201	regulatory region 377201	1815 bp downstream
Rr600880	regulatory region 600880	1944 bp distal
Rr600881	regulatory region 600881	585 bp proximal