rs27571798 SNP Detail

Summary

• ID
  rs27571798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131859411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCACACT GTTGTCTGCC
  TGCTCTGGGT GTGTGGGCAC ATGAGCATCT GCCTTGGCTA CTAACACTCC CTCCACAAAA
  AAGTTCAACG CCAACTGCAT GGCGATTTGC CATTTATAGG GCGTGGAAGC CTCATCAAGG
  GTCTGTCTGC TCACACCTGA ATGGCTTCCT TCCTGGAAAG CATGGATAAA CTAGCAGTCT
  Y
  GTGCCAAGGT ACAATATTTC CCTGGTCTTA AGAACAAGTC CCAATTAAGA AAGGGCTTTC
  TGACGGTCCC TGAAAGGCAG TCTTTGCCTG GCACCCACCA CACTGAAGTG CTAACAAACT
  ACAGATTCCC AACCTCTTTT ATAAAGAGGA CAGAGTTCCT AATGCAATGC AGCTCTTCTG
  GGGCATCAAC ATGGCGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37747214	NES09170003	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	T	T	C		C		T	T	T		T
ss147473509	ENSMUSSNP4537673	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T											C
ss321330911	CHEV_4_131688015	CHEVERUD	SCREENING_POP	f	SNP												T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27571798					SNP	T	T	T	T	T	C	T	C	T	T	C	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37747214	NES09170003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131859411 () rs orientation: forward

Symbol	Name	Function Class
Oprd1	opioid receptor, delta 1	Intron
Rr600881	regulatory region 600881	227 bp proximal